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    si:dkey-19b23.10 si:dkey-19b23.10 [ Danio rerio (zebrafish) ]

    Gene ID: 569048, updated on 27-Mar-2024

    Summary

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    Official Symbol
    si:dkey-19b23.10provided by ZNC
    Official Full Name
    si:dkey-19b23.10provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-141219-47
    See related
    Ensembl:ENSDARG00000098410 AllianceGenome:ZFIN:ZDB-GENE-141219-47
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable transcription corepressor activity. Predicted to be involved in histone deacetylation; negative regulation of transcription, DNA-templated; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of histone deacetylase complex and transcription regulator complex. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (20556649..20577609)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (20304853..20325641)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene zgc:103586 Neighboring gene solute carrier family 3 member 2a Neighboring gene zgc:158423 Neighboring gene uncharacterized LOC108190658 Neighboring gene si:dkey-19b23.7 Neighboring gene zona pellucida protein AX 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transcription corepressor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of histone deacetylase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of transcription regulator complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein si:dkey-19b23.10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      20556649..20577609
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021477771.1 → XP_021333446.1  uncharacterized protein si:dkey-19b23.10 isoform X1

      UniProtKB/TrEMBL
      A0A8M9QCK8
      Conserved Domains (2) summary
      pfam01448
      Location:426 → 484
      ELM2; ELM2 domain
      cl21498
      Location:534 → 573
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    2. XM_021477772.1 → XP_021333447.1  uncharacterized protein si:dkey-19b23.10 isoform X2

      UniProtKB/TrEMBL
      A0A0R4IB58, A0A8M9PPJ8
      Related
      ENSDARP00000131613.1, ENSDART00000169661.2
      Conserved Domains (2) summary
      pfam01448
      Location:412 → 470
      ELM2; ELM2 domain
      cl21498
      Location:520 → 559
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394685.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      168107..189067
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009303113.3 → XP_009301388.1  uncharacterized protein si:dkey-19b23.10 isoform X1

      See identical proteins and their annotated locations for XP_009301388.1

      UniProtKB/TrEMBL
      A0A8M9QCK8
      Conserved Domains (2) summary
      pfam01448
      Location:426 → 484
      ELM2; ELM2 domain
      cl21498
      Location:534 → 573
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    2. XM_009303115.3 → XP_009301390.1  uncharacterized protein si:dkey-19b23.10 isoform X2

      UniProtKB/TrEMBL
      A0A0R4IB58, A0A8M9PPJ8
      Conserved Domains (2) summary
      pfam01448
      Location:412 → 470
      ELM2; ELM2 domain
      cl21498
      Location:520 → 559
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    Nucleotide Protein Strain
    Heading Accession and Version

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